Introducing the 3rd Generation ELN:
Sapio ELaiN

sapio elain animation

The ELN is no more. Meet your new AI co-scientist.

Legacy ELNs just record history and slow down R&D.

Sapio ELaiN is the 3rd Gen ELN, an AI co-scientist, your thinking scientific partner that accelerates discovery, automates the grind, and frees scientists to focus on breakthroughs.

elain seamless

ELaiN makes scientific AI seamless across every step of drug discovery:

  • Search, plan & design with prompts
  • Build & execute automatically
  • Analyze & optimize in real time

The ELN is dead.
The future is AI-native.

Imagine buying R&D software that:

  • Only records history
  • Slows you down with endless clicks and manual step
  • Forces you into rigid templates
  • Keeps analysis in separate, clunky tools
  • Spends more time on admin than on science

You wouldn’t buy it!

The era of traditional ELNs is over. Sapio ELaiN is the first AI-native ELN. Via a simple prompt, it guides discovery, automates work, and accelerates science.

molbio

Ask anything. ELaiN delivers.

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ELaiN Builds

Build an experiment based on a Standard Operating Procedure file.

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ELaiN Plans

Plan, document and optimize an experiment.

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ELaiN Analyzes

Perform a BLAST search, multisequence alignment, and codon optimize it.

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ELaiN Searches

Find samples I created last year with a Sciex concentration greater than 400.

With vs. Without Sapio ELaiN

The results speak for themselves:

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Efficient: turn hours of work into minutes

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Effective: fail fast by identifying poor candidates early

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Innovative: an expert AI co-scientist helps you unleash your scientific curiosity

“Of all the applications for GenAI, nothing excites me more than the potential to use this incredible technology to find quicker and cheaper ways to cure diseases. With the launch of next-gen tools like Sapio ELaiN, leveraging cutting-edge technology from Amazon Web Services (AWS), the path to discovery and patient care just got a lot faster.”

Scott Baldwin, Area Leader, Amazon AWS

Sapio ELaiN: What Makes an AI Lab Notebook Different?

  • AI Co-Scientist
  • Advanced Molecular Biology Toolkit
  • Unify Data, Powerful Visualizations
  • No-Code Workflow
    Configuration
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The interface of the future is a prompt

Sapio ELaiN’s AI Co-Scientist helps design and run experiments, interpret SOPs, optimize plate layouts, analyze data, generate visualizations, and capture compliant records automatically. It guides decisions, reduces manual effort, and accelerates discovery so your scientists can focus on what matters most: breakthrough science.

lims eln vector modification

ELN with science aware tools and objects

More than a single pane of glass, the electronic notebook should deliver built-in scientific applications that provide real utility to scientists without disruption. Sapio ELN ® includes integrated designers for CRISPR, plasmids, compounds, PCR primer, and vector modification, genome browser, and more—empowering scientists to do what they do best.

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Scientist-led analysis, not SQL code 

Tired of an army of database scientists standing between you and your scientific data? Made for science, not SQL, Sapio ELN ® offers scientists rich data search, visualization, and analysis. Quickly find structured and unstructured data across your entire organization with science-aware™ searching, including the ability to locate compounds by substructure and similarity. Then, bring your data to life in interactive, scientific visualizations—all without ever leaving your ELN.

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No-code, flexible electronic lab notebook

Sapio’s drag-and-drop workflow builder, English sentence rules engine, configurable user interface, and natural language AI-chat, ELaiN, simplify life in the lab. They aid scientists and lab operations in efficiently configuring processes and workflows, improving day-to-day operations, and enhancing data analysis and reporting.

g2 top electronic lab notebook eln vendors

TOP ELN VENDOR
Why do Sapio customers love our configurability and open lab platform?

Advanced Electronic Lab Notebook Features

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Reusable experiment templates

ELNs leverage reusable experiment templates to enhance laboratory productivity by enabling scientists to easily create standardized, pre-designed experiment layouts and protocols. Researchers can easily replicate these templates, saving time and ensuring consistency across experiments. This also reduces the risk of human error and ultimately helps make life in the lab easier for busy scientists. 

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Molecular Biology Toolkit

An enhanced Molecular Biology Toolkit for advanced research – essential for cutting-edge molecular biology projects. It includes CRISPR Design with both annotated and non-annotated multiple sequence alignment views, Plasmid & Compound Design, PCR Primer Design, Golden Gate Assembly, and Vector Modification Tools for precise genetic alterations.

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Flow Data Analysis

Flow cytometry data analysis can be a time-intensive task. Using machine learning, Sapio’s Flow ELN assists researchers in efficiently managing and analyzing flow cytometry data by allowing them to input, store, and visualize the results. Researchers can track cell populations, analyze fluorescence intensities, and create graphical representations of the data within the ELN, making it a valuable tool for streamlining the analysis of flow cytometry experiments. 

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Free Form Note Taking

Observations and ideas don’t always fit neatly into a predefined template. Much like a traditional notebook, ELN software enables users to capture and record information in a flexible and unstructured manner. It permits researchers to make open-format, free-text notes, sketches, or annotations, offering the versatility to document various types of data and insights naturally – without restriction.

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Built-in data visualization

An effective ELN should be equipped with tools to visualize, analyze, and utilize scientific data in a truly scientific way. With Sapio ELN, users can easily interpret complex data with a science-aware knowledge graph that utilizes AI analytics. Save time on repetitive tasks and instead uncover insights that drive forward your research.

One Electronic Lab Notebook, Multiple Use Cases

Whether you work in biotechnology, chemistry, genetic sequencing, in vivo, or bioanalytical studies, discover which ELN solution can encourage collaboration and drive forward scientific analysis across your teams.

solution research

Research ELN

Realize the full potential of the digital lab with a scalable ELN that utilizes advanced workflow processes.

Learn more about our Research ELN

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Clinical Diagnostic ELN

Our clinical ELN solution enables your diagnostics lab to better manage large volumes of data.

Learn more about our Clinical Diagnostic ELN

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NGS ELN

NGS-ready ELN software that delivers seamless instrument integrations to simplify the complexity of NGS workflows.

Learn more about our NGS ELN

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Histopathology ELN

Combine no-code workflows and science-aware data management for deeper scientific insights.

Learn more about our Histopathology ELN

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In Vivo ELN

Manage in vivo studies with modern ELN software designed for data capture, collaboration, and insights.

Learn more about our In Vivo ELN

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Bioanalytical ELN

Our ELN software is designed to support flexible and reproducible bioanalytical studies, no matter the scale or complexity.

Learn more about our Bioanalytical ELN

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Bioprocessing ELN

Our integrated ELN software forms part of a fresh digital solution to improve collaboration and data quality during bioprocessing research.

Learn more about our Bioprocessing ELN

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Stability ELN

ELN software that supports scientists in accelerating and advancing their stability studies, ensuring safe and accessible pharmaceutical products for all.

Learn more about our Stability ELN

The Electronic Lab Notebook with Unlimited Flexibility

The Sapio no-code ELN lab notebook is equipped with advanced tools to visualize, analyze, and utilize scientific data in a truly scientific way. Here are some of the features our customers love most.

Interested in our ELN solutions? View our pricing options to find the plan that best fits your laboratory’s needs.

  • MolBio Toolkit

    • CRISPR Design
    • Genome Browser
    • Plasmid Design
    • PCR Primer Design
    • Vector Modification
    • Restriction Cloning
    • Golden Gate
    • NVIDIA BioNeMo NIM microservices
  • Document experiments
  • Experiment templates
  • Realtime collaboration
  • Instrument integration
  • AI-Chat Assistant ELaiN
  • 3D Plating
  • Flow cytometry analysis
  • Built-in statistical calcs
  • SOP and GxP compliance
  • Data security

Electronic Lab Notebook Product Resources

Whitepaper

Unlock the Power of Science-Aware AI in Life Sciences

Read More
Download Whitepaper – Unlock the Power of Science-Aware AI in Life Sciences

Case Study

LabConnect Launches LIMSConnect to Accelerate Global Clinical Trials

Read More
Download Case Study – LabConnect Launches LIMSConnect to Accelerate Global Clinical Trials

Whitepaper

Why AILNs are the Future of Scientific Discovery

Read More
Download Whitepaper – Why AILNs are the Future of Scientific Discovery

Sapio ELaiN FAQs

What’s the best Electronic Lab Notebook (ELN) software?

The best ELN is the one that supports your science without getting in the way. For some teams, that means flexible experiment templates and collaboration features. For others, it means tighter integration with data systems, easier compliance, or the ability to work across both biology and chemistry workflows.

Many ELNs today still operate in isolation—separate from LIMS, instruments, or analytics tools. This often leads to duplicated work, inconsistent data, and lost context. What sets newer platforms apart is how well they unify data, automate routine steps, and support real-time collaboration between scientists.

Sapio’s ELN is part of a broader platform that combines experiment design, workflow automation, and sample tracking in one place. It’s built to handle complex R&D and clinical workflows, from antibody discovery to sequencing to stability studies, with native support for multimodal data and built-in scientific analytics. There’s no need to export files or switch tools just to ask a question of your data or run an analysis.

For a side-by-side look at how leading ELN vendors compare—and what to consider when choosing the right solution for your lab—see our Best ELN Software of 2025 blog.

What is electronic lab notebook software?

An electronic lab notebook (ELN) is a digital tool that aids scientists in securely recording and organizing their experimental data, observations, and research notes. ELNs encourage collaboration, as well as enhance data integrity and accessibility, making it a preferred choice over traditional paper notebooks for modern research. Learn more in our comprehensive guide: What is an Electronic Lab Notebook?

Many labs pair ELNs with Laboratory Information Management Systems (LIMS) to handle structured sample, test, and workflow data. For labs seeking a fully integrated approach, Sapio’s best LIMS 2025 offers seamless interoperability with our ELN—supporting end-to-end lab informatics on a single platform.

Who uses ELNs?

Electronic lab notebooks (ELNs) are used by a diverse group of professionals, including scientists in academia, pharmaceutical and biotech companies, chemists, biologists, clinical researchers, environmental scientists, material scientists, engineers, and quality control teams.

Their flexibility and efficiency make them essential for data management, collaboration, and regulatory compliance across a wide range of scientific and research disciplines.

What makes one ELN superior to the next?

Many view the electronic lab notebook as a pane of glass, a more visual and sophisticated form of the paper notebook. But this definition assumes the ELN is still a passive tool and not an active one. Conversely, a differentiated ELN will not just standardize and digitize traditional lab notes, it will open new possibilities by harmonizing the notebook function with powerful science-aware™ capabilities.

For example, imagine an electronic lab notebook that could support embedded, editable data visualizations, or allow you to design scientific entities that can subsequently be used across all your experiments at scale? Consider a world in which all your scientific observations are highly searchable—with science-aware™ linkages that help you find and use precisely the data you are looking for. Layer on top rich scientific collaboration tools and an integrated platform for LIMS and data management, and you have so much more than a digital version of the lab notebook.

Beyond sheer capability, the ELN is also highly differentiated by its interface. Does it work the way the scientist thinks? If the answer is no, adoption will continue to be an uphill battle. If the answer is yes, then adoption will be unanimous.

Why is adoption such a struggle with electronic notebooks?

Many assert that poor ELN adoption is a byproduct of change-resistant scientists—but this is not the case. Poor ELN adoption is much more the byproduct of poor solutions that either don’t work the way scientists do or fail to provide the enhanced utility needed to justify a change in approach.

Scientists are about anything that accelerates scientific progress. When the ELN becomes a powerful enabler of faster discovery, more effective analysis, and richer scientific collaboration, it will be used by scientists everywhere. In fact, the Sapio ELN is enthusiastically embraced by scientific teams, who recognize its ability to simultaneously simplify and supercharge their daily work.

What should you look for when choosing ELN software?

The biggest thing an ELN needs to provide for scientists to use it is an interface that works the way they do. If a scientist is used to composing experiments in a certain way, for example, the ELN should enable them to do so—only easier and more simply than ever before.

An ELN should also be so much more than a pretty (inter)face. It should provide scientists a variety of Science-aware™ tools that enable them to not only digitize, but enhance, experiments. Take our 3D plater, for example, which enables scientists to assemble plates with automation-enhanced ease. Or our experiment builder, which allows scientists to define and reuse experiments using drag-and-drop. Or our scientific collaboration tools, which allow scientists to rally around their work in a way that a paper notebook never could.

When an ELN provides all these things, scientists will not only use it—they will embrace it wholeheartedly and never look back.

How do ELNs help scientific data management?

The laboratory notebook is home to a wealth of scientific data, including experimental data points, observations, instrument data, scientific objects, and more. Unfortunately, the traditional lab notebook, and even many electronic lab notebooks, fail to bridge the gap between storing this data and making it usable in more meaningful ways to drive scientific progress throughout the organization.

At Sapio, we recognize that the ELN and the LIMS are inseparable from scientific data management. The data from these solutions must be easy to search, reuse, standardize, analyze, and utilize throughout the organization. Most importantly, these functions should not require scientists to exit the lab informatics platform and outsource scientific data intelligence to another (often non-scientific) solution. Everything should be done in one place—where the data is and where the scientists are.

Learn more about lab data management in our comprehensive guide.

Why should I consider Sapio a trusted partner?

Sapio Sciences’ lab informatics solutions are trusted by some of the world’s largest and fastest growing pharma and biotech companies. Sapio’s technology is backed by deep expertise in the creation of user-friendly applications and an unwavering focus on the priorities and requirements of the scientific user.

Our customers consider Sapio a dedicated partner, and we are committed to transparency and truthfulness in all that we do. Visit our company page to learn more about The Sapio Seven—seven principles that are foundational to our mission and products.

How much does ELN software cost?

The cost of ELN software varies widely, ranging from free or low-cost options with limited functionality to more expensive solutions, depending on features and scale. It’s crucial to evaluate different ELN notebook options to find one that fits your budget and requirements.

Explore the various ELN options available in our blog: The Different Types of Electronic Lab Notebook

We offer several editions of our platform that can be tailored to each customer’s level of requirements. Check out our pricing page to learn more about pricing and features for our Gold, Silver, and Bronze editions (our Bronze ELN is free for academics).

What if my team and I don’t have an IT department?

Our commitment to lowering the barriers to adoption starts during implementation. Our lab informatics platform, including ELN, LIMS, and Scientific Data Cloud, are fully cloud-based and require nothing more than a modern web browser. Simply sign up and get started. Are you an academic? You can register to use our Sapio Bronze edition for free.

Our commitment to lowering the barriers to adoption starts during implementation. Our lab informatics platform, including ELN, LIMS, and Scientific Data Cloud, are fully cloud-based and require nothing more than a modern web browser. Simply sign up and get started. Are you an academic? You can register to use our Sapio Bronze edition for free.

Sapio’s digital lab notebook is so easy to use and frictionless to adopt, that many scientists find they do not need any training at all.

For customers that are looking for a little extra support, we provide free access to our support forum and helpful resource library. In addition, our resource library provides useful information about ELN and LIMS software and offers customers access to whitepapers and additional support.

Beyond our forum and resource library, the entire Sapio team is dedicated to supporting our customers in meeting their lab informatics-related objectives now and in the future. We consider ourselves true partners and are proud of the level of support

Are you a Sapio Sciences customer and have a question? You can reach our sales and customer support team via email or call us at (410) 800-4620.

What if my team doesn’t have time to train up?

The Sapio ELN is so easy to use and frictionless to adopt, that many scientists find they do not need any training at all.

For customers that are looking for a little extra support, we provide free access to our support forum and helpful resource library. In addition, our resource library provides useful information about ELN and LIMS software and offers customers access to whitepapers and additional support.

Beyond our forum and resource library, the entire Sapio team is dedicated to supporting our customers in meeting their lab informatics-related objectives now and in the future. We consider ourselves true partners and are proud of the level of support

Are you a Sapio Sciences customer and have a question? You can reach our sales and customer support team via email or call us at (410) 800-4620.

What is an AI Lab Notebook (AILN) and how is it different from a traditional ELN?

An AI Lab Notebook (AILN) goes beyond documenting experiments. Unlike traditional ELNs that passively store information, an AILN like Sapio ELaiN actively collaborates with scientists. It understands natural language prompts, retrieves and analyzes data, designs experiments, and ensures compliance—all in one workspace. In short, it acts as a co-scientist, not just a digital filing cabinet.

What does “Agentic AI in the Lab” mean?

Agentic AI means the AI isn’t limited to language—it can take actions. In the lab, this means ELaiN doesn’t just generate text or suggestions; it can call scientific algorithms, launch docking jobs, build experiments from SOPs, or retrieve prior results across systems. By being “agentic,” ELaiN knows how to use tools, data, and workflows—just like a scientist would—making it practically useful, not just conversational.

What is a “Prompt-Driven AILN” and why does it matter?

A prompt-driven AILN lets scientists simply type or speak what they want: “Design a study from this SOP” or “Find all my samples with Sciex results above 400.” ELaiN interprets the request, builds the workflow, and executes it. This eliminates the steep learning curve of software click-paths, enabling immediate productivity—even for new users—while still giving experts full transparency and control.

Sapio ELaiN Demo: Experience it yourself

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